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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40093406_40214908_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40093406 - 40214908
Intron Length:
121503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTCATTTATAT
Flanking Amino Acid:
TSGCSTPSPATVETQSTSSE
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
48.7
-0
1.8
70.39
40

Associated Gene:

Gene:
RARB
Ensembl Gene ID:
ENSAPLG00000006432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048378
40007508 - 40280545
273038
ENSAPLT00000006723
39968543 - 40280545
312003