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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40191298_40214908_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40191298 - 40214908
Intron Length:
23611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTCATTTATAT
Flanking Amino Acid:
TEWQHRHSAQSVETQSTSSE
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.9
38.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
36.5
-1.5
3.2
49.7
39.7
Minor BPS
48.7
-0
1.8
70.39
40

Associated Gene:

Gene:
RARB
Ensembl Gene ID:
ENSAPLG00000006432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037629
40191141 - 40280545
89405