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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40204502_40214908_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40204502 - 40214908
Intron Length:
10407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTCATTTATAT
Flanking Amino Acid:
ARCGKLPCQEAVETQSTSSE
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
48.7
-0
1.8
70.39
40

Associated Gene:

Gene:
RARB
Ensembl Gene ID:
ENSAPLG00000006432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045490
40204435 - 40279311
74877