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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40215058_40236454_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40215058 - 40236454
Intron Length:
21397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATT
Flanking Amino Acid:
YGVSACEGCKGFFRRSIQKN
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.8
0.76
0.8
81.4
35
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
83.2
1.13
0.9
94.4
25.5

Associated Gene:

Gene:
RARB
Ensembl Gene ID:
ENSAPLG00000006432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037629
40191141 - 40280545
89405
ENSAPLT00000006723
39968543 - 40280545
312003
ENSAPLT00000048378
40007508 - 40280545
273038
ENSAPLT00000045490
40204435 - 40279311
74877