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Intron Name: Anas_platyrhynchos_platyrhynchos_2_40261597_40268654_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40261597 - 40268654

Intron Length:

7058

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTATG

5'SS Class:

major

3'SS Sequence:

GCTTTCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATGTTTTTGATT

Flanking Amino Acid:

SLCQLGKYTTNSSADHRVRL

Intron Amino Acid Position:

211

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

75.9

39.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

85.1

0.79

0.8

76.7

37.4

Minor 5ss

41.5

-0.9

2.8

57.1

41.1

Minor BPS

65.6

0.57

1.1

75.74

35.5

Associated Gene:

Gene:

RARB

Ensembl Gene ID:

ENSAPLG00000006432

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037629

40191141 - 40280545

89405

ENSAPLT00000006723

39968543 - 40280545

312003

ENSAPLT00000048378

40007508 - 40280545

273038

ENSAPLT00000045490

40204435 - 40279311

74877