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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40268832_40275434_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40268832 - 40275434
Intron Length:
6603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTACC
5'SS Class:
major
3'SS Sequence:
TATCCTTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATTTTTATCC
Flanking Amino Acid:
LLKAACLDILILRICTRYTP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
71.7
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.4
0.64
0.8
73.3
31.2
Minor 5ss
36.1
-1.6
2.9
43.4
37.9
Minor BPS
59.3
0.27
1.6
66.08
40.1

Associated Gene:

Gene:
RARB
Ensembl Gene ID:
ENSAPLG00000006432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037629
40191141 - 40280545
89405
ENSAPLT00000006723
39968543 - 40280545
312003
ENSAPLT00000048378
40007508 - 40280545
273038
ENSAPLT00000045490
40204435 - 40279311
74877