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Intron Name: Anas_platyrhynchos_platyrhynchos_2_40275640_40276957_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40275640 - 40276957

Intron Length:

1318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCGTAC

5'SS Class:

major

3'SS Sequence:

ATACTTCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

ATGTATTTAAAA

Flanking Amino Acid:

LLSAICLICGDRQDLEEPMK

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.4

1.2

61.1

40.6

Major BPS

81.6

0.78

0.8

24.9

Major PPT

76.9

0.61

0.9

70.6

35.3

Minor 5ss

41.5

-0.9

3.4

58.4

46.5

Minor BPS

59.5

0.3

1.6

68.04

Associated Gene:

Gene:

RARB

Ensembl Gene ID:

ENSAPLG00000006432

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037629

40191141 - 40280545

89405

ENSAPLT00000006723

39968543 - 40280545

312003

ENSAPLT00000048378

40007508 - 40280545

273038

ENSAPLT00000045490

40204435 - 40279311

74877