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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40277117_40279114_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40277117 - 40279114
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTACC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
ITDLRSISAKGAERVITLKM
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
69.9
40.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
41.5
-0.9
2.8
55.7
41.4
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
RARB
Ensembl Gene ID:
ENSAPLG00000006432
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048378
40007508 - 40280545
273038
ENSAPLT00000045490
40204435 - 40279311
74877
ENSAPLT00000037629
40191141 - 40280545
89405
ENSAPLT00000006723
39968543 - 40280545
312003