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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40280501_40281306_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40280501 - 40281306
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAAAT
Flanking Amino Acid:
KKTPKSTPSKETPWKKVNSI
Intron Amino Acid Position:
1577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.2
82.3
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
1
73.3
41.6
Minor 5ss
40.2
-1.1
2.8
53
44.1
Minor BPS
64.2
0.52
1.7
84.29
36.6

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039859
40279990 - 40343066
63077