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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40281405_40282280_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40281405 - 40282280
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTATATATTC
Flanking Amino Acid:
GIPKKTAAPKGKGRGAKKRK
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.8
0.54
0.8
66.6
34.2
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
46.7
-0.2
1.9
62.53
37

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432