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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40284228_40284529_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40284228 - 40284529
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TCTGTGATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CAAATCTTAATG
Flanking Amino Acid:
FPSYSQKTDDDTTKLDSDEE
Intron Amino Acid Position:
1468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.5
40.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72.3
0.5
0.9
65.6
39.9
Minor 5ss
42.2
-0.9
3
52.3
45.8
Minor BPS
56.7
0.07
1.4
53.67
41.4

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039859
40279990 - 40343066
63077
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648