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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40284613_40285099_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40284613 - 40285099
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
ATGTAGTTAATG
Flanking Amino Acid:
FSPAKSKPSPERKTSQEKKN
Intron Amino Acid Position:
1440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
67.5
0.39
1.2
70.9
38.9
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
48.6
-0.2
2.2
58.46
43.6

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039859
40279990 - 40343066
63077
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648