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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40285308_40286115_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40285308 - 40286115
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAAG
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
CTATCTTGAGAT
Flanking Amino Acid:
PRDSLLRRAAAERPKYTFDF
Intron Amino Acid Position:
1371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
59.9
46.4
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
43.2
-0.7
3
57
47.3
Minor BPS
48.6
-0
1.8
67.06
43.4

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077