About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40288213_40289254_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40288213 - 40289254
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
CGTTGTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAGAT
U12 Branch Point Sequence:
TCCCCCCCCACA
Flanking Amino Acid:
DLAAFVEELEKVEAQEREDV
Intron Amino Acid Position:
1204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
50.8
0.02
1.1
47.1
36.1
Major PPT
73.5
0.53
1
72.6
42.4
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
42.4
-0.6
2.2
53.63
44.5

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432