About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40289628_40290749_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40289628 - 40290749
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTACTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GCTTCTAAAACT
Flanking Amino Acid:
VKAWKEAQEKAAEEEDPQNQ
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
80.9
31.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.5
0.69
0.8
79.1
34.2
Minor 5ss
38.1
-1.3
3
52.4
44.3
Minor BPS
52.5
0.16
2
73.24
43.7

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432