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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40293813_40295307_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40293813 - 40295307
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TTTGCAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTTTTTGCAATT
Flanking Amino Acid:
MLDGLDPHPMLPNYKNFKGT
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
78.9
0.65
0.9
75.1
38.7
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
51.6
0.13
2.1
79.05
38

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077