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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40297824_40299762_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40297824 - 40299762
Intron Length:
1939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTATTCTTAATA
Flanking Amino Acid:
NERSIPSLVDGLKPGQRKVL
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
76.9
0.61
0.9
74.3
35
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
81.7
0.99
1
83.77
29.9

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077