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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40305412_40307392_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40305412 - 40307392
Intron Length:
1981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGAACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TCTTCCTGAACT
Flanking Amino Acid:
IPKLDDANDAGGKHSLDCTL
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
70.3
0.46
0.9
62.2
37.7
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
81.9
1.08
1.3
93.08
35.2

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648
ENSAPLT00000039859
40279990 - 40343066
63077