About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40320386_40322408_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40320386 - 40322408
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTTATTACTT
Flanking Amino Acid:
GLYKIFDEILVNAADNKQRD
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80
34.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
80.2
0.68
0.8
75.8
32.8
Minor 5ss
38.4
-1.3
3
47.8
43.1
Minor BPS
52.6
0.16
1.8
72.26
38.8

Associated Gene:

Gene:
TOP2B
Ensembl Gene ID:
ENSAPLG00000006835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039859
40279990 - 40343066
63077
ENSAPLT00000035082
40279169 - 40343066
63898
ENSAPLT00000025844
40119718 - 40343149
223432
ENSAPLT00000007261
40280502 - 40343149
62648