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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40362518_40363035_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40362518 - 40363035
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTTTCTTAATT
Flanking Amino Acid:
SPTTEIALLGDKNLCSYSDF
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77.4
0.62
0.8
74.6
29.2
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657