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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40363214_40366257_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40363214 - 40366257
Intron Length:
3044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACATAATG
Flanking Amino Acid:
WRKVETDWKMVYLARKEGSS
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
74.9
35.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
72.1
0.5
0.9
71
34.9
Minor 5ss
32.9
-1.9
3.7
43.1
45.5
Minor BPS
51.8
-0
2
65.28
42.6

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657