About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40366447_40367831_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40366447 - 40367831
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAC
5'SS Class:
major
3'SS Sequence:
TTGCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTTTTTGCCT
Flanking Amino Acid:
RVARGEAGSEKRKEVIFVPS
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76
33.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
86.2
0.81
0.8
84.4
30.5
Minor 5ss
42.2
-0.9
2.5
54
43.3
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657