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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40367997_40373061_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40367997 - 40373061
Intron Length:
5065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
AAATGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAT
Flanking Amino Acid:
RETINTFNRKRQRFLAESRK
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.7
0.49
1
66.8
43.9
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
84.8
1.17
1.1
97.05
26.9

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657