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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40373173_40373345_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40373173 - 40373345
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGCTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
SYVIAFSKDEVVDVTWRYSC
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
55.6
0.13
1.7
66.4
44.6
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657