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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40373492_40373795_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40373492 - 40373795
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTA
5'SS Class:
major
3'SS Sequence:
CTTTCTCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CATTGTTTACTT
Flanking Amino Acid:
FEARYVWDYTDHVWTEVYSS
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
75.2
35.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
78.1
0.63
0.8
74.2
29.8
Minor 5ss
39.6
-1.2
3.5
56
48.2
Minor BPS
49.2
0.02
2
68.01
43.8

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657