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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40373918_40374161_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40373918 - 40374161
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTGTTTTCAATT
Flanking Amino Acid:
NQCQFCNRFPRYNNPEKLLE
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.6
0.71
0.7
74.4
30.8
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
58.8
0.35
1.5
72.07
39.6

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657