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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40374385_40377513_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40374385 - 40377513
Intron Length:
3129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
GTAAATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTTGTGTAAAT
Flanking Amino Acid:
KLAQATRLDKGAHVNEDDFL
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
72.9
0.52
1
65
45.1
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
47.4
-0.1
2.4
73.53
43.4

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657