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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40377671_40380190_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40377671 - 40380190
Intron Length:
2520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTACT
5'SS Class:
major
3'SS Sequence:
AATCCTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTTTATGACT
Flanking Amino Acid:
ETSLVQSLEMAANMLKVLQS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
79
34.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.8
0.67
0.9
73.5
36
Minor 5ss
38.6
-1.3
2.8
49.9
40.2
Minor BPS
54.9
0.23
1.6
71.99
39.2

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657