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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40380434_40382542_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40380434 - 40382542
Intron Length:
2109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTAAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCCTAAATT
Flanking Amino Acid:
ECLFEMGFQEGETHLIFPKE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.5
0.46
0.9
67.1
37.9
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
80.6
1.04
1.5
95.75
31

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657