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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40382658_40382827_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40382658 - 40382827
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TCGATTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AGGTAATTAAAG
Flanking Amino Acid:
LLLAYADNILRNPAEEKYRL
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.7
0.67
0.9
77.1
37.1
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
46.4
-0.4
1.9
50.67
42.5

Associated Gene:

Gene:
NGLY1
Ensembl Gene ID:
ENSAPLG00000007816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008154
40362299 - 40382955
20657