About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40439521_40450861_F

Intron Information:

Intron Rank:
142132
Intron Class:
major
Intron Phase:
Intron Coordinates:
40439521 - 40450861
Intron Length:
11341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CACTCTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACATTTACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.7
0.56
0.9
67.6
37.5
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
54
0.11
2
70.05
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026532
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041928
40439125 - 40451184
12060