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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40464810_40465664_F

Intron Information:

Intron Rank:
129962
Intron Class:
major
Intron Phase:
Intron Coordinates:
40464810 - 40465664
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TAACTGCTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68.9
0.43
0.9
61.8
39.5
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018228
40464689 - 40475294
10606