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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40464810_40475000_F

Intron Information:

Intron Rank:
129965
Intron Class:
major
Intron Phase:
Intron Coordinates:
40464810 - 40475000
Intron Length:
10191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTTTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
92.4
0.95
0.7
87.5
30
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
57.9
0.11
1.8
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039014
40463790 - 40475294
11505