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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40496027_40500918_F

Intron Information:

Intron Rank:
141014
Intron Class:
major
Intron Phase:
Intron Coordinates:
40496027 - 40500918
Intron Length:
4892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAAACACTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.9
0.63
0.9
72
38
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
49.3
-0
2
64.14
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025957
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022803
40495904 - 40503637
7734