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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40501124_40502794_F

Intron Information:

Intron Rank:
141015
Intron Class:
major
Intron Phase:
Intron Coordinates:
40501124 - 40502794
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGAAT
U12 Branch Point Sequence:
TCCGCATGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
54.5
0.11
1.4
65.3
38.6
Major PPT
73
0.52
1
72.1
32.9
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
47.5
-0.2
1.8
55.85
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025957
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022803
40495904 - 40503637
7734
ENSAPLT00000030971
40492201 - 40503637
11437
ENSAPLT00000027508
40494679 - 40503637
8959