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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40502993_40503208_F

Intron Information:

Intron Rank:
141016
Intron Class:
major
Intron Phase:
Intron Coordinates:
40502993 - 40503208
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTCCTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.9
0.85
0.6
84
24.2
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
65.1
0.47
1.6
76.51
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025957
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022803
40495904 - 40503637
7734
ENSAPLT00000030971
40492201 - 40503637
11437
ENSAPLT00000027508
40494679 - 40503637
8959