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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40549626_40550729_R

Intron Information:

Intron Rank:
133714
Intron Class:
major
Intron Phase:
Intron Coordinates:
40549626 - 40550729
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TTACTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTCTGTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
60.4
44.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.8
0.74
0.8
77.6
30.9
Minor 5ss
35
-1.7
3.3
50.1
46.1
Minor BPS
55.5
0.25
2.3
82.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036228
40549523 - 40560072
10550