About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40550875_40558146_R

Intron Information:

Intron Rank:
133715
Intron Class:
major
Intron Phase:
Intron Coordinates:
40550875 - 40558146
Intron Length:
7272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATCAGTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78.3
0.64
0.7
77.5
30.9
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
48.7
-0.1
1.9
59.39
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036228
40549523 - 40560072
10550