Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40644230_40670836_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

40644230 - 40670836

Intron Length:

26607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTTAT

U12 Branch Point Sequence:

TATGGTATAAGG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

78.7

29.9

Major BPS

72.5

0.56

1.1

63.4

Major PPT

88.6

0.87

0.6

Minor 5ss

38.9

-1.3

2.8

48.3

47.4

Minor BPS

-0.8

2.2

48.7

45.1

Associated Gene:

Gene:

LRRC3B

Ensembl Gene ID:

ENSAPLG00000002239

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002238

40644165 - 40706073

61909