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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40757885_40919053_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
40757885 - 40919053
Intron Length:
161169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTATA
5'SS Class:
major
3'SS Sequence:
CAGCTGGACGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCAGAT
U12 Branch Point Sequence:
TGCACTTCAGCT
Flanking Amino Acid:
ENAKVTRANLSPERHNGK*
Intron Amino Acid Position:
1078

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
78
38.6
Major BPS
56.4
0.16
1.3
54.7
43.1
Major PPT
42.7
-0.4
1.7
38.4
38.7
Minor 5ss
43.5
-0.7
3
59.5
45.1
Minor BPS
48.2
-0
1.8
65.78
44.6

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025739
40756860 - 40968808
211949