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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_408193_409572_F

Intron Information:

Intron Rank:
132700
Intron Class:
major
Intron Phase:
Intron Coordinates:
408193 - 409572
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATTTTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.8
0.69
0.8
79
34.2
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
63.2
0.49
1.6
78.59
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021319
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022968
408047 - 412402
4356