About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40819748_40819834_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40819748 - 40819834
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
AEGMTYEQLQTIIEEILEES
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.1
0.74
0.8
78.3
34.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026649
40819688 - 40864763
45076