Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40819888_40821294_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40819888 - 40821294

Intron Length:

1407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAAAA

5'SS Class:

major

3'SS Sequence:

CTCTTATTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TGCCTCTTATTT

Flanking Amino Acid:

ANTLAPDDRKGIVGTSDIAE

Intron Amino Acid Position:

349

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.1

76.9

33.7

Major BPS

73.9

0.59

30.2

Major PPT

0.56

79.1

32.1

Minor 5ss

38.3

-1.3

2.9

48.8

46.9

Minor BPS

55.5

0.25

1.6

69.46

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026328

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026649

40819688 - 40864763

45076