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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40823299_40825976_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
40823299 - 40825976
Intron Length:
2678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
CTGTGTTGCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GAGTGGTGAAAA
Flanking Amino Acid:
QLHKIIFITQLPPALQCNLK
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.2
37.7
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
65
0.34
1
60.4
40.4
Minor 5ss
61
0.37
2.4
75.1
34.5
Minor BPS
39
-0.8
2.4
47.56
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026649
40819688 - 40864763
45076