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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40826078_40831514_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40826078 - 40831514
Intron Length:
5437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTGTCCTGATTT
Flanking Amino Acid:
IEGLGSRLRPASTGIAVSQR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.1
78.8
38.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80
0.68
0.9
73.6
36
Minor 5ss
49.4
-0
2.5
66.9
44.4
Minor BPS
56
0.27
1.8
72.44
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026649
40819688 - 40864763
45076