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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40849964_40858751_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40849964 - 40858751
Intron Length:
8788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTCAGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
CAGTATGTAACG
Flanking Amino Acid:
CHRQLSTLPQHYEKLSLLSS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
63
0.29
1.2
65.4
40.2
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
44.7
-0.5
2.2
48.81
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026649
40819688 - 40864763
45076