About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40858966_40863944_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40858966 - 40863944
Intron Length:
4979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTAGAG
Flanking Amino Acid:
YSEKVSLTIKRCLTPDAETR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
84.2
33.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
88.1
0.86
0.6
84.5
23.5
Minor 5ss
39.6
-1.2
3.3
59.2
45.4
Minor BPS
51.4
-0.1
2
63.75
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026328
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026649
40819688 - 40864763
45076