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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40918395_40919053_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40918395 - 40919053
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCTATA
5'SS Class:
major
3'SS Sequence:
TTACTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TCATCTTTACTT
Flanking Amino Acid:
ENAKVTRANLSPEKPESVKI
Intron Amino Acid Position:
1102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
78
38.6
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
77.3
0.61
0.9
73.8
35.3
Minor 5ss
43.5
-0.7
3
59.5
45.1
Minor BPS
63.8
0.51
1.6
75.99
41.5

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029136
40918313 - 40990694
72382
ENSAPLT00000026437
40917152 - 40999537
82386
ENSAPLT00000045188
40918313 - 41010830
92518
ENSAPLT00000018499
40918313 - 41023690
105378
ENSAPLT00000044648
40918313 - 40968808
50496
ENSAPLT00000034918
40917152 - 40968808
51657