Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40918395_40920601_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40918395 - 40920601

Intron Length:

2207

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTCAGTTTT

5'SS Class:

major

3'SS Sequence:

TTACTTTCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

TCATCTTTACTT

Flanking Amino Acid:

SCTQGEEASLP*

Intron Amino Acid Position:

1170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.3

80.5

34.9

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

77.3

0.61

0.9

73.8

35.3

Minor 5ss

41.7

-0.9

2.9

42.4

Minor BPS

63.8

0.51

1.6

75.99

41.5

Associated Gene:

Gene:

SLC4A7

Ensembl Gene ID:

ENSAPLG00000004253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004504

40918335 - 40968808

50474