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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_40918395_40920887_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40918395 - 40920887
Intron Length:
2493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TCATCTTTACTT
Flanking Amino Acid:
LNFPVKTLKYSPEKPESVKI
Intron Amino Acid Position:
1152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
77.3
0.61
0.9
73.8
35.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
63.8
0.51
1.6
75.99
41.5

Associated Gene:

Gene:
SLC4A7
Ensembl Gene ID:
ENSAPLG00000004253
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019964
40917152 - 40968808
51657